meierlab.networks: Functional Network Connectivity

Functions

gen_base_graph_from_atlas(atlas[, atlas_delim])	Generate a networkx graph containing atlas/parcellation information.
gen_graph_from_matrix(G, atlas, matrix_file)	Generate a (weighted, undirected) graph from a matrix file.
gen_basic_metrics(G)	Assign some basic graph theory metrics to nodes in a graph.
gen_subnetwork_list(G[, subnetwork_label])	Generate a list of 'subnetworks' used in an atlas/parcellation.
gen_subnetwork_subgraphs(G, subnetwork_list)	Generate 'subgraphs' according to the given 'subnetworks'.
gen_subnetwork_pairs(G, subgraph_list[, ...])	Generate pairs of networks from graph G to explore and compare.
get_within_network_connectivity(subgraph[, ...])	Calculate the average weight of edges in a subgraph.
get_between_network_connectivity(subgraphs)	Calculate the average of weighted edges of each subgraph pair.