Note
This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.
meierlab.viz.network_viz.plot_subgraph_connectome#
- meierlab.viz.network_viz.plot_subgraph_connectome(subgraph, atlas_coords, threshold='80%', dim='2d')[source]#
Plot the connectome for a subgraph, e.g. plot only one subnetwork.
- Parameters:
- subgraph
networkx.Graph.subgraph Subgraph to plot.
- atlas_coordsnumpy.ndarray
Atlas coordinates.
- thresholdstr, optional
Edge threshold for viewing, by default “80%”.
- dimstr, optional
View plot in 2d or 3d, by default “2d”.
- subgraph
- Returns:
- view
nilearn.plotting.html_connectome.ConnectomeView Nilearn connectome viewer with the subgraph. Save as an html page or view using ‘open_in_browser’ method.
- view
Examples
>>> from meierlab.viz import network_viz as nv