Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the user guide for the big picture.

meierlab.networks.graph.gen_subnetwork_list#

meierlab.networks.graph.gen_subnetwork_list(G, subnetwork_label='RSN')[source]#

Generate a list of ‘subnetworks’ used in an atlas/parcellation.

Useful for creating subgraphs.

Parameters:

Gnetworkx.Graph: Graph containing nodes with a subnetwork_label attribute.
subnetwork_labelstr, optional: Node label attribute to search, by default “RSN”

Returns:

list: A list of ‘subnetworks’ that nodes in G belong to.

Examples

>>> from meierlab.networks import graph
>>> atlas = 'schaefer2018/atlas.csv'
>>> G = graph.gen_base_graph_from_atlas(atlas)
>>> rsn_list = graph.gen_subnetwork_list(G)
>>> print(rsn_list)
['DMN','Visual']